Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12504835 | chr4:110750760 | C/G | 5.0E-5 | 485 | 15.9 | 16.23 | 16.5 | KM Plot |
| THCA | rs12510851 | chr4:110752010 | T/C | 0.000143 | 474 | 16.57 | 15.97 | 14.55 | KM Plot |
| THCA | rs12513108 | chr4:110754499 | T/C | 0.00014 | 475 | 16.37 | 16.02 | 14.55 | KM Plot |
| THCA | rs12527123 | chr6:46071663 | G/A | 5.56E-5 | 488 | 15.77 | 16.57 | 17.77 | KM Plot |
| THCA | rs12529353 | chr6:46123348 | T/A | 5.34E-5 | 489 | 15.77 | 16.37 | 27.37 | KM Plot |
| THCA | rs12536833 | chr7:29478242 | C/T | 4.92E-5 | 490 | 15.9 | 14.92 | 20.77 | KM Plot |
| THCA | rs12541129 | chr8:52448165 | A/G | 0.000245 | 476 | 15.2 | 16.97 | 12.43 | KM Plot |
| THCA | rs12547730 | chr8:8122420 | C/G | 0.000209 | 476 | 15.33 | 18.03 | 12.53 | KM Plot |
| THCA | rs12551191 | chr9:36026134 | C/T | 9.08E-6 | 472 | 15.9 | 15.08 | 17.93 | KM Plot |
| THCA | rs12562535 | chr1:166992062 | C/T | 8.59E-8 | 479 | 15.83 | 16.1 | 17.17 | KM Plot |
| THCA | rs12564233 | chr1:91865122 | C/T | 8.57E-6 | 486 | 15.67 | 16.68 | 17.77 | KM Plot |
| THCA | rs12566254 | chr1:91811592 | A/C | 7.89E-6 | 489 | 15.68 | 17 | 17.77 | KM Plot |
| THCA | rs12568445 | chr1:91854864 | G/A | 8.23E-6 | 488 | 15.63 | 17 | 17.77 | KM Plot |
| THCA | rs12568483 | chr1:91781576 | C/A | 7.89E-6 | 489 | 15.63 | 17.03 | 17.77 | KM Plot |
| THCA | rs12578427 | chr12:53502849 | C/T | 3.12E-11 | 486 | 16.3 | 15.83 | 6.62 | KM Plot |